Seqera Platform

Posts tagged with "Seqera Platform"

Seqera PlatformNextflow

Introducing the Seqera AI CLI - Your AI-Powered Terminal Assistant for Nextflow Development

Today we introduce the Seqera AI CLI – an intelligent command-line assistant that brings context-aware AI directly to your Nextflow development. This powerful tool transforms how you build, run, and manage Nextflow pipelines, all from the comfort of your terminal.

Sasha Dagayev

Seqera Platform

50% Faster Delivery, 4x Faster Pipeline Development: Transforming Bioinformatics Operations

Here, we showcase how a life sciences bioinformatics core recently transformed their operations with Nextflow and Seqera, to achieve a 50% improvement in data delivery time and 4x faster pipeline development.

Lizzie Bolitho

Seqera Platform

Streamlined Version Control for Studios: Introducing Git Repository Integration

At the recent Nextflow Summit, we announced a powerful new capability for Seqera Studios: native Git repository integration. This update transforms how teams manage interactive analysis environments by bringing version control directly into the Studio creation workflow, enabling reproducible, shareable, and team-friendly development environments.

Rob Newman

Seqera Platform

Building a Scalable Protein Design Pipeline with Seqera AI for Adaptyv's Nipah Binder Competition

Here, we demonstrate how we used Seqera AI to build a scalable protein design pipeline that helped us rank 6th (based on ipSAE ranking) in Adaptyv’s Nipah Binder Competition

Florian Wuennemann

Edmund Miller

Florian Wuennemann & Edmund Miller

Seqera Platform

End-to-End AI-Enabled Variant Analysis in Seqera Studios with the Help of AIVA

Studios enables researchers to perform AIVA's AI-powered variant analysis – enabling seamless integration between bioinformatics pipelines and clinical analysis.

Drew DiPalma

Tarun Mamidi

Drew DiPalma & Tarun Mamidi

NextflowSeqera Platform

Bioinformatics Pipelines Through the Ages: From Bash to Nextflow to Agents

Bioinformatics tools and workflows are rapidly transforming to address increasing complexity and demands for reproducibility, scalability, and collaboration. Here's my retrospective on this evolution in the industry.

Ken Brewer

Seqera Platform

Simplifying Workflow Automation: Node-RED Integration for Seqera

We’re delighted to announce that we’ve just released a new Node-RED integration for Seqera which democratizes automation, enabling researchers to build workflows without depending on IT teams.

Phil Ewels

Seqera Platform

What’s New at Seqera: GxP-Aligned Bioinformatics, Expanded Data Connections, AI Integrations, and More

I began today's Nextflow Summit talking about our vision to make scientists' lives simpler, one pipeline at a time. The same platform, but better suited to bioinformatics in 2025. Every product update we’ve announced today builds on this foundation, moving us through the complete journey from scientific infrastructure, through innovation and velocity. From GxP-aligned pipeline versioning and in-platform data exploration on HPC, to AI in Platform and our new MCP Server, here’s the latest Seqera updates you won’t want to miss.

Evan Floden

Seqera PlatformCommunity

Enabling Single-Cell Benchmarks at Scale: The OpenProblems.bio, Viash, and Seqera Partnership

Single-cell analysis sits at the intersection of machine learning and biology. Advances in microfluidic technology have transformed data collection, creating large, tabular datasets well suited to machine-learning (ML) methods. OpenProblems.bio formalizes evaluating approaches into living, community‑run benchmarks (curated tasks, datasets, methods, and metrics) and then executes them as robust pipelines.

Evan Floden

Robrecht Cannoodt

Evan Floden & Robrecht Cannoodt

Seqera Platform

Introducing the Seqera MCP Server: Bringing Seqera to Your Preferred AI Agent

The AI revolution is reshaping how we interact with computational infrastructure. We recently announced the Seqera AI Integration in Platform, our purpose-built bioinformatics AI that can directly execute, debug, and launch workflows within Seqera Platform. Today, we're taking the next decisive step forward by opening Seqera to the entire AI ecosystem through our new Seqera MCP server. Fully integrated with Seqera single sign on (SSO), you can make your preferred AI tool (e.g. Claude AI, VS Code Copilot, Cursor) your new control center for Seqera Platform.

Paolo Di Tommaso

Paolo Di Tommaso

Seqera Platform

Achieve Granular Cloud Resource Tracking with Dynamic Resource Labels

Today, we are excited to announce dynamic resource labels — a new Seqera Platform feature that solves the per-workflow cost tracking challenge by automatically injecting unique workflow and session identifiers into every cloud job. This removes the necessity for manual configuration, whether your workflows run in AWS, Azure, or Google Cloud.

Anton Tsyganov-Bodounov

Llewellyn van der Berg

Anton Tsyganov-Bodounov & Llewellyn van der Berg

Seqera Platform

6 Reasons Why Bioinformatics is Hard and How Seqera Helps

As science accelerated, teams needed more than just workflow tools, they needed better data integration, scalability, and collaboration. Scientific progress was getting stuck because the technology was too complex. That’s why we created Nextflow and Seqera. In the blog post, we highlight six core problems that make bioinformatics harder than it should be and how Seqera, the Nextflow-first tech stack, addresses each one.

Esha Joshi

Seqera Platform

Seqera AI in Platform: Develop, Debug, and Execute in One Unified Experience

Today, we're excited to announce that Seqera AI now has read and write access to Seqera Platform. This enables Seqera AI to directly interact with Seqera Platform primitives to debug pipelines, modify parameters, and launch runs, all without switching context between different tools and interfaces.

Sasha Dagayev

Seqera Platform

What’s New: Seqera Platform Enterprise Release 25.2

Seqera Platform Enterprise 25.2 delivers significant enhancements across security, observability, and flexibility to accelerate your workflow orchestration capabilities. Key updates in this release include redesigned user interfaces, expanded cloud support, and powerful new development tools.

Drew DiPalma

Seqera Platform

Optimizing High-Throughput Bioinformatics with Fusion

Fusion is the cloud-native file system designed and optimized for Nextflow pipelines that removes these barriers. It simplifies infrastructure, enhances performance, and cuts costs, making it easier for bioinformaticians to develop, maintain, and scale pipeline code.

Paolo Di Tommaso

Paolo Di Tommaso

Seqera Platform

Scaling with Seqera: From Prototype to Enterprise-Grade Deployment

Modern scientific research doesn’t just scale up, it scales in every direction: across code, compute, teams, and projects. Today, success isn’t measured by how much data is processed, but by how rapidly teams can adapt, reproduce results, and scale efficiently. Seqera exists to enable this. In this blog, we explore how the Seqera ecosystem empowers R&D leaders to scale innovation, streamline operations, and deliver faster, more reproducible scientific outcomes.

Esha Joshi

Seqera Platform

BigOmics Meets Studios: End-to-end Exploration of RNA-Seq and Proteomics Data in Seqera Platform

BigOmics Analytics have partnered with Seqera to bring Omics Playground (BigOmics’ interactive RNA-seq and proteomics workbench) into Studios (the interactive analysis feature of Seqera Platform). The result is a seamless, end-to-end path from raw reads to interactive plots, all deployed on the same infrastructure as your Nextflow pipelines.

Rob Syme

Axel Martinelli

Rob Syme & Axel Martinelli

Seqera Platform

Seqera Integrates NVIDIA Parabricks and Fusion to Seamlessly Accelerate Genomics Analysis

NVIDIA and Seqera have partnered to combine the strengths of NVIDIA® Parabricks®,a GPU-accelerated software suite for omics, and Fusion, Seqera’s optimized filesystem for cloud-native Nextflow pipelines. Together, these technologies dramatically accelerate data analysis, reduce costs, and simplify cloud infrastructure for bioinformatics teams.

Edmund Miller

Rike Hanssen

Rob Syme

Florian Wuennemann

Edmund Miller, Rike Hanssen, Rob Syme & Florian Wuennemann

Seqera Platform

Deploying custom applications in Seqera Studios

Studios already provides pre-built, version-controlled container template images (namely Jupyter, R IDE, VS Code, and Xpra). But what if you need an application we don’t offer? The solution: add your own. In this blog post, we’ll demonstrate how to build custom Docker images for Studios and highlight useful examples.

Edmund Miller

Florian Wuennemann

Jon Manning

Edmund Miller, Florian Wuennemann & Jon Manning

Seqera Platform

What’s New from Seqera: Product Highlights from the Nextflow Summit

At Nextflow Summit Boston 2025, we unveiled a series of exciting product updates to do just that. From compute optimization and pipeline resilience, to smarter platform intelligence and an elevated developer experience, here are the key product highlights you won’t want to miss.

Drew DiPalma

Seqera Platform

Seqera Compute - Managed, Optimized Compute for Scalable Bioinformatics

Today, we’re thrilled to announce the Public Preview of Seqera Compute — fully managed, optimized compute for scientists to run Nextflow pipelines and interactive analyses effortlessly. Built for scalability and security, Seqera Compute ensures a hassle-free Nextflow and interactive analysis experience, empowering teams to move faster, scale smarter, and do more — all without the infrastructure burden.

Evan Floden

Seqera Platform

Discovery Demands Infrastructure: Why Research Can’t Scale Without It

We’re at a tipping point in how research infrastructure must evolve. Too often we encounter world-class teams who are spending their time configuring compute environments, debugging pipelines, or stitching together incompatible tooling. That’s not innovation, it’s inefficiency disguised as necessity.

Evan Floden

Seqera Platform

From researcher to enterprise: Better science through better software

From a single researcher in a lab to enterprise-wide teams tackling global health challenges, the needs are the same: reliability, scalability, and simplicity.

Evan Floden

Seqera Platform

Seqera Studios is now generally available: Interactive analysis starts here

We are excited to announce that Studios, a powerful feature of Seqera Platform that enables interactive analysis with fully customizable containers and compute environments, is now generally available. Explore how Studios is accelerating the entire data lifecycle and get a sneak peek at exciting new and upcoming features.

Rob Newman

Seqera Platform

Seqera Studios: 4 real-world use cases for interactive analysis

Studios is a powerful feature of the Seqera Platform that enables users to seamlessly transition between bioinformatics pipelines and interactive analysis. In this blog post, we showcase real-world applications of interactive analysis using Studios.

Elizabeth Bolitho

Llewellyn van der Berg

Elizabeth Bolitho & Llewellyn van der Berg

Seqera Platform

How utilizing resource labels on Seqera can help with high resolution cost analysis in AWS

This blog post provides a step-by-step guide to setting up and understanding resource labels within Seqera Platform and how they can be used to tag AWS infrastructure resources for detailed cost reporting across your workflows and teams.

Florian Wuennemann

Florian Wuennemann

Seqera Platform

Running Nextflow Workflows with Seqera and Slurm on Nebius AI Cloud Platform

Explore how to leverage Seqera Platform and Slurm on Nebius AI Cloud platform using Soperator (Slurm operator for Kubernetes) to deploy scalable Nextflow workflows.

Florian Wuennemann

Alexander Kim

Florian Wuennemann & Alexander Kim

Seqera Platform

Automating resource creation with Seqerakit

By addressing the growing need for automation, Seqerakit helps scientists reclaim their time from repetitive tasks and focus on extracting meaningful insights from their genomic data.

Llewellyn van der Berg

Llewellyn van der Berg

Seqera Platform

Introducing Seqera Studios - Custom environments

Data Studios custom environments allows users to dynamically build, or bring their own container templates, to create reproducible custom analysis environments.

Rob Newman

Seqera PlatformFusion

Optimizing image segmentation modeling using Seqera Platform

Performing interactive analysis is considered one of the most difficult phases in the entire bioinformatics process. User-friendly interactive environments that are adjacent to your data and streamline the end-to end analysis process are critical.

Rob Syme

Seqera Platform

Introducing the new Pipeline Launch forms: A leap forward in usability and functionality

Today, we are excited to introduce the newly redesigned Pipeline launch forms, marking the first phase in a broader initiative to revamp the entire form submission experience across our platform.

Mattia Bosio

Seqera Platform

Studios – Interactive analysis in Seqera Platform

An overview of Studios - a new feature in Seqera Platform that enables analysts and data scientists to add interactive envrionments.

Rob Newman

AnnouncementNextflow TowerCloudSeqera Platform

Introducing the Seqera Platform - one platform for the data analysis lifecycle

Introducing the Seqera Platform - one platform for the data analysis lifecycle

Noel Ortiz

NextflowSeqera Platform

Best Practices for Deploying Pipelines with the Seqera Platform (formerly Nextflow Tower)

Learn how to easily deploy your Nextflow pipelines using the Seqera Platform and nf-core tools.

Evan Floden