Episode 23

Clever containers: Wave & Wavelit

Paolo Di Tommaso gives us the rundown on Wave containers.

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Episode 23 9/25/2023

Clever containers: Wave & Wavelit

Paolo Di Tommaso gives us the rundown on Wave containers. We talk about how wave makes pipelines faster and more secure, all with simpler & cleaner code!

Episode 22 9/11/2023

Nextflow language updates: Better error messages

In this episode of the Channels podcast, it’s all about developer experience! We chat about debugging, error messages and language servers.

Episode 21 8/28/2023

Live debugging Nextflow, Ambassadors & Training

Ever wanted to peer inside Nextflow as it runs your pipeline? We play with an interactive debugger to do just that. Also, a first peek at a new Nextflow Ambassador program!

Episode 20 8/14/2023

Tower CLI, infrastructure as code and some Seqera road map previews

Evan Floden and Harshil Patel discuss reproducible compute with the Tower CLI and new data tools on the Seqera road map.

Episode 19 7/31/2023

Nextflow runtime updates: Talking tasks

We discuss task provenance, cloud cache databases and task grouping.

Episode 18 7/17/2023

Learning Nextflow in 2023

Rob Syme tells us about new Nextflow training material and opportunities to learn Nextflow in 2023.

Episode 17 7/3/2023

Nextflow language updates: Power to the processes

Ben Sherman tells us about future improvements to Nextflow syntax for processes.

Episode 16 6/19/2023

Infrastructure team: nf-validation and nf-core components

Join us as we discuss the new nf-validation Nextflow plugin and talk nf-core components: modules and subworkflows.

Episode 15 6/5/2023

Coming soon to Nextflow: From command-line to cleanup

We talk to Nextflow developer Ben Sherman about some exciting new features coming soon to Nextflow: a new CLI v2 interface; submission of job arrays and intermediate file cleanup during runs.

Episode 14 5/22/2023

Summer podcast season, Nextflow release highlights.

Welcome back to the Summer 2023 series of the Channels Podcast! In this episode we kick things off with some of the highlights from the latest Nextflow releases. There were a lot of goodies in there..

Episode 13 3/22/2023

Nextflow turns 10!

Phil Ewels, Paolo Di Tommaso and Evan Floden look back on 10 years of scientific workflows.

Episode 12 2/1/2023

News and Views: S3 file names, Spack package manager support and local hackathon sites.

S3 file names, Spack package manager support and local hackathon sites.

Episode 11 1/25/2023

News and Views: The Sarus container engine, staging outputs and the GITHUB_TOKEN

The Sarus container engine, staging outputs and the GITHUB_TOKEN.

Episode 10 1/18/2023

News and Views: The Flux executor, bytesize transcripts and improved error messaging

The Flux executor, bytesize transcripts and improved error messaging.

Episode 9 1/11/2023

News and Views: End of DSL1 and AI pipelines

Updates to the Nextflow language and putting ML pipelines to good use..

Episode 8 12/21/2022

News and Views: nf-test, mentorships and debugging resume

nf-test, mentorships and debugging resume

Episode 7 12/14/2022

Interview: Robert Petit

Pathogens, Bactopia and awesome shirts

Episode 6 12/8/2022

News and Views: Introducing "Channels" the rebranded podcast

An introduction to the News and Views episode format.

Episode 5 3/2/2022

Interview with Evan Floden, CEO and co-founder from Seqera

In this Podcast, Rob Lalonde of Seqera speaks with Dr. Evan Floden, CEO and co-founder of Seqera. Rob and Evan talk about the history of Nextflow, breaking bad, and the future of bioinformatics. Evan also provides a live demo of Nextflow Tower.

Episode 4 12/20/2021

Interview with Cedric Notredame of Notredame Lab

Seqera speaks with Cedric Notredame of the CRG about cloud, pipelines, and the evolution of Nextflow from its early days.

Episode 3 9/15/2021

Interview with Lorena Pantano of NextRNA

Inside a Bioinformatics Startup – with NextRNA Therapeutics.

Episode 2 4/15/2021

Interview with Nils Homer of Fulcrum Genomics

Seqera speaks to Nils Homer of Fulcrum Genomics about the bioinformatics industry, advances in technology and tools, and coming industry developments.

Episode 1 3/2/2021

Interview with Phil Ewels of SciLifeLab

In this Podcast, Rob Lalonde speaks with Phil Ewels of SciLifeLab Sweden, part of NGI Stockholm. In this fascinating discussion, they cover everything from nf-core to future bioinformatics challenges.