Sep 25, 2023 | Episode 23
Clever containers: Wave & Wavelit
Paolo Di Tommaso gives us the rundown on Wave containers.
Watch now![Paolo Di Tommaso](/static/317fcf5d5c0e420bf97caa29566aa8fd/db806/paoloditommaso.png)
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Clever containers: Wave & Wavelit
Paolo Di Tommaso gives us the rundown on Wave containers. We talk about how wave makes pipelines faster and more secure, all with simpler & cleaner code!
![Paolo Di Tommaso](/static/317fcf5d5c0e420bf97caa29566aa8fd/914ee/paoloditommaso.png)
Nextflow language updates: Better error messages
In this episode of the Channels podcast, it’s all about developer experience! We chat about debugging, error messages and language servers.
![Ben Sherman](/static/78eef558fb03a80ca96a8a98fb587fad/77b35/bensherman.jpg)
![Phil Ewels](/static/ad5cca876439bb114ef0bf45afdc92dd/914ee/philewels.png)
Live debugging Nextflow, Ambassadors & Training
Ever wanted to peer inside Nextflow as it runs your pipeline? We play with an interactive debugger to do just that. Also, a first peek at a new Nextflow Ambassador program!
![Phil Ewels](/static/ad5cca876439bb114ef0bf45afdc92dd/914ee/philewels.png)
![Chris Hakkaart](/static/0eb4585faf79b17fdfff89d7fa7e20bd/914ee/chris-hakkaart-bio.png)
![Marcel Ribeiro-Dantas](/static/6a707f0a50d4240f47d535af2654065c/77b35/marcelribeirodantas.jpg)
Tower CLI, infrastructure as code and some Seqera road map previews
Evan Floden and Harshil Patel discuss reproducible compute with the Tower CLI and new data tools on the Seqera road map.
![Phil Ewels](/static/ad5cca876439bb114ef0bf45afdc92dd/914ee/philewels.png)
![Evan Floden](/static/bdf864b6abe28af4eb8bb0f80b9a3201/914ee/evanfloden.png)
![Harshil Patel](/static/8b3dd766e8c563d34f291876afaabd6d/77b35/harshil_patel.jpg)
Nextflow runtime updates: Talking tasks
We discuss task provenance, cloud cache databases and task grouping.
![Phil Ewels](/static/ad5cca876439bb114ef0bf45afdc92dd/914ee/philewels.png)
![Chris Hakkaart](/static/0eb4585faf79b17fdfff89d7fa7e20bd/914ee/chris-hakkaart-bio.png)
![Ben Sherman](/static/78eef558fb03a80ca96a8a98fb587fad/77b35/bensherman.jpg)
Learning Nextflow in 2023
Rob Syme tells us about new Nextflow training material and opportunities to learn Nextflow in 2023.
![Chris Hakkaart](/static/0eb4585faf79b17fdfff89d7fa7e20bd/914ee/chris-hakkaart-bio.png)
![Marcel Ribeiro-Dantas](/static/6a707f0a50d4240f47d535af2654065c/77b35/marcelribeirodantas.jpg)
![Rob Syme](/static/efe162ebdf630b8b8f988e9c0ce8dfe0/77b35/rob_syme.jpg)
Nextflow language updates: Power to the processes
Ben Sherman tells us about future improvements to Nextflow syntax for processes.
![Phil Ewels](/static/ad5cca876439bb114ef0bf45afdc92dd/914ee/philewels.png)
![Marcel Ribeiro-Dantas](/static/6a707f0a50d4240f47d535af2654065c/77b35/marcelribeirodantas.jpg)
![Ben Sherman](/static/78eef558fb03a80ca96a8a98fb587fad/77b35/bensherman.jpg)
Infrastructure team: nf-validation and nf-core components
Join us as we discuss the new nf-validation Nextflow plugin and talk nf-core components: modules and subworkflows.
![Chris Hakkaart](/static/0eb4585faf79b17fdfff89d7fa7e20bd/914ee/chris-hakkaart-bio.png)
![Phil Ewels](/static/ad5cca876439bb114ef0bf45afdc92dd/914ee/philewels.png)
![Júlia Mir Pedrol](/static/de1002ea579cc5fa5e278cab3c064838/914ee/seqeralabs.png)
![Matthias Hörtenhuber](/static/de1002ea579cc5fa5e278cab3c064838/914ee/seqeralabs.png)
Coming soon to Nextflow: From command-line to cleanup
We talk to Nextflow developer Ben Sherman about some exciting new features coming soon to Nextflow: a new CLI v2 interface; submission of job arrays and intermediate file cleanup during runs.
![Phil Ewels](/static/ad5cca876439bb114ef0bf45afdc92dd/914ee/philewels.png)
![Ben Sherman](/static/78eef558fb03a80ca96a8a98fb587fad/77b35/bensherman.jpg)
Summer podcast season, Nextflow release highlights.
Welcome back to the Summer 2023 series of the Channels Podcast! In this episode we kick things off with some of the highlights from the latest Nextflow releases. There were a lot of goodies in there..
![Phil Ewels](/static/ad5cca876439bb114ef0bf45afdc92dd/914ee/philewels.png)
![Chris Hakkaart](/static/0eb4585faf79b17fdfff89d7fa7e20bd/914ee/chris-hakkaart-bio.png)
![Marcel Ribeiro-Dantas](/static/6a707f0a50d4240f47d535af2654065c/77b35/marcelribeirodantas.jpg)
Nextflow turns 10!
Phil Ewels, Paolo Di Tommaso and Evan Floden look back on 10 years of scientific workflows.
![Paolo Di Tommaso](/static/317fcf5d5c0e420bf97caa29566aa8fd/914ee/paoloditommaso.png)
![Phil Ewels](/static/ad5cca876439bb114ef0bf45afdc92dd/914ee/philewels.png)
![Evan Floden](/static/bdf864b6abe28af4eb8bb0f80b9a3201/914ee/evanfloden.png)
News and Views: S3 file names, Spack package manager support and local hackathon sites.
S3 file names, Spack package manager support and local hackathon sites.
![Chris Hakkaart](/static/0eb4585faf79b17fdfff89d7fa7e20bd/914ee/chris-hakkaart-bio.png)
![Marcel Ribeiro-Dantas](/static/6a707f0a50d4240f47d535af2654065c/77b35/marcelribeirodantas.jpg)
News and Views: The Sarus container engine, staging outputs and the GITHUB_TOKEN
The Sarus container engine, staging outputs and the GITHUB_TOKEN.
![Chris Hakkaart](/static/0eb4585faf79b17fdfff89d7fa7e20bd/914ee/chris-hakkaart-bio.png)
![Marcel Ribeiro-Dantas](/static/6a707f0a50d4240f47d535af2654065c/77b35/marcelribeirodantas.jpg)
News and Views: The Flux executor, bytesize transcripts and improved error messaging
The Flux executor, bytesize transcripts and improved error messaging.
![Chris Hakkaart](/static/0eb4585faf79b17fdfff89d7fa7e20bd/914ee/chris-hakkaart-bio.png)
![Marcel Ribeiro-Dantas](/static/6a707f0a50d4240f47d535af2654065c/77b35/marcelribeirodantas.jpg)
News and Views: End of DSL1 and AI pipelines
Updates to the Nextflow language and putting ML pipelines to good use..
![Phil Ewels](/static/ad5cca876439bb114ef0bf45afdc92dd/914ee/philewels.png)
![Chris Hakkaart](/static/0eb4585faf79b17fdfff89d7fa7e20bd/914ee/chris-hakkaart-bio.png)
![Marcel Ribeiro-Dantas](/static/6a707f0a50d4240f47d535af2654065c/77b35/marcelribeirodantas.jpg)
News and Views: nf-test, mentorships and debugging resume
nf-test, mentorships and debugging resume
![Phil Ewels](/static/ad5cca876439bb114ef0bf45afdc92dd/914ee/philewels.png)
![Chris Hakkaart](/static/0eb4585faf79b17fdfff89d7fa7e20bd/914ee/chris-hakkaart-bio.png)
![Marcel Ribeiro-Dantas](/static/6a707f0a50d4240f47d535af2654065c/77b35/marcelribeirodantas.jpg)
Interview: Robert Petit
Pathogens, Bactopia and awesome shirts
![Robert Lalonde](/static/c734fc61ad41d35ccdb5b1661be3dc5e/77b35/robertlalonde.jpg)
News and Views: Introducing "Channels" the rebranded podcast
An introduction to the News and Views episode format.
![Phil Ewels](/static/ad5cca876439bb114ef0bf45afdc92dd/914ee/philewels.png)
![Chris Hakkaart](/static/0eb4585faf79b17fdfff89d7fa7e20bd/914ee/chris-hakkaart-bio.png)
![Marcel Ribeiro-Dantas](/static/6a707f0a50d4240f47d535af2654065c/77b35/marcelribeirodantas.jpg)
Interview with Evan Floden, CEO and co-founder from Seqera
In this Podcast, Rob Lalonde of Seqera speaks with Dr. Evan Floden, CEO and co-founder of Seqera. Rob and Evan talk about the history of Nextflow, breaking bad, and the future of bioinformatics. Evan also provides a live demo of Nextflow Tower.
![Robert Lalonde](/static/c734fc61ad41d35ccdb5b1661be3dc5e/77b35/robertlalonde.jpg)
![Evan Floden](/static/bdf864b6abe28af4eb8bb0f80b9a3201/914ee/evanfloden.png)
Interview with Cedric Notredame of Notredame Lab
Seqera speaks with Cedric Notredame of the CRG about cloud, pipelines, and the evolution of Nextflow from its early days.
![Robert Lalonde](/static/c734fc61ad41d35ccdb5b1661be3dc5e/77b35/robertlalonde.jpg)
![Cedric Notredame](/static/2db6a9db78de2b9de907dbcaeeddb3e2/77b35/cedricnotredame.jpg)
Interview with Lorena Pantano of NextRNA
Inside a Bioinformatics Startup – with NextRNA Therapeutics.
![Robert Lalonde](/static/c734fc61ad41d35ccdb5b1661be3dc5e/77b35/robertlalonde.jpg)
Interview with Nils Homer of Fulcrum Genomics
Seqera speaks to Nils Homer of Fulcrum Genomics about the bioinformatics industry, advances in technology and tools, and coming industry developments.
![Robert Lalonde](/static/c734fc61ad41d35ccdb5b1661be3dc5e/77b35/robertlalonde.jpg)
Interview with Phil Ewels of SciLifeLab
In this Podcast, Rob Lalonde speaks with Phil Ewels of SciLifeLab Sweden, part of NGI Stockholm. In this fascinating discussion, they cover everything from nf-core to future bioinformatics challenges.
![Robert Lalonde](/static/c734fc61ad41d35ccdb5b1661be3dc5e/77b35/robertlalonde.jpg)