Sep 25, 2023 | Episode 23
Clever containers: Wave & Wavelit
Paolo Di Tommaso gives us the rundown on Wave containers.
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Clever containers: Wave & Wavelit
Paolo Di Tommaso gives us the rundown on Wave containers. We talk about how wave makes pipelines faster and more secure, all with simpler & cleaner code!
Nextflow language updates: Better error messages
In this episode of the Channels podcast, it’s all about developer experience! We chat about debugging, error messages and language servers.
Live debugging Nextflow, Ambassadors & Training
Ever wanted to peer inside Nextflow as it runs your pipeline? We play with an interactive debugger to do just that. Also, a first peek at a new Nextflow Ambassador program!
Tower CLI, infrastructure as code and some Seqera road map previews
Evan Floden and Harshil Patel discuss reproducible compute with the Tower CLI and new data tools on the Seqera road map.
Nextflow runtime updates: Talking tasks
We discuss task provenance, cloud cache databases and task grouping.
Learning Nextflow in 2023
Rob Syme tells us about new Nextflow training material and opportunities to learn Nextflow in 2023.
Nextflow language updates: Power to the processes
Ben Sherman tells us about future improvements to Nextflow syntax for processes.
Infrastructure team: nf-validation and nf-core components
Join us as we discuss the new nf-validation Nextflow plugin and talk nf-core components: modules and subworkflows.
Coming soon to Nextflow: From command-line to cleanup
We talk to Nextflow developer Ben Sherman about some exciting new features coming soon to Nextflow: a new CLI v2 interface; submission of job arrays and intermediate file cleanup during runs.
Summer podcast season, Nextflow release highlights.
Welcome back to the Summer 2023 series of the Channels Podcast! In this episode we kick things off with some of the highlights from the latest Nextflow releases. There were a lot of goodies in there..
Nextflow turns 10!
Phil Ewels, Paolo Di Tommaso and Evan Floden look back on 10 years of scientific workflows.
News and Views: S3 file names, Spack package manager support and local hackathon sites.
S3 file names, Spack package manager support and local hackathon sites.
News and Views: The Sarus container engine, staging outputs and the GITHUB_TOKEN
The Sarus container engine, staging outputs and the GITHUB_TOKEN.
News and Views: The Flux executor, bytesize transcripts and improved error messaging
The Flux executor, bytesize transcripts and improved error messaging.
News and Views: End of DSL1 and AI pipelines
Updates to the Nextflow language and putting ML pipelines to good use..
News and Views: nf-test, mentorships and debugging resume
nf-test, mentorships and debugging resume
Interview: Robert Petit
Pathogens, Bactopia and awesome shirts
News and Views: Introducing "Channels" the rebranded podcast
An introduction to the News and Views episode format.
Interview with Evan Floden, CEO and co-founder from Seqera Labs
In this Podcast, Rob Lalonde of Seqera Labs speaks with Dr. Evan Floden, CEO and co-founder of Seqera Labs. Rob and Evan talk about the history of Nextflow, breaking bad, and the future of bioinformatics. Evan also provides a live demo of Nextflow Tower.
Interview with Cedric Notredame of Notredame Lab
Seqera Labs speaks with Cedric Notredame of the CRG about cloud, pipelines, and the evolution of Nextflow from its early days.
Interview with Lorena Pantano of NextRNA
Inside a Bioinformatics Startup – with NextRNA Therapeutics.
Interview with Nils Homer of Fulcrum Genomics
Seqera Labs speaks to Nils Homer of Fulcrum Genomics about the bioinformatics industry, advances in technology and tools, and coming industry developments.
Interview with Phil Ewels of SciLifeLab
In this Podcast, Rob Lalonde speaks with Phil Ewels of SciLifeLab Sweden, part of NGI Stockholm. In this fascinating discussion, they cover everything from nf-core to future bioinformatics challenges.