Seqera

Summer podcast season, Nextflow release highlights.

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In this News and Views episode, Phil Ewels, Chris Hakkaart and Marcel Ribeiro-Dantas discuss the hottest topics in the Nextflow world.

Welcome back to the Summer Season

We’re back with another season of the coolest Nextflow podcast! - The plan is to have a new episode every two weeks - We will focus more on technical content, specially new Nextflow features - Semi-regularly, we’ll have developer guests to talk about changes and updates

23.04.x NF releases

  • Multiple things that were discussed in the past and publicized in edge releases finally made their way in a stable release
    • this includes the fair process directive, Fusion, the Flux executor, Sarus container engine and the Spack package manager
  • Apptainer is a new container engine supported by Nextflow
  • New config option conda.channels
  • Support to rclone and fcp for file transfer (stageOutMode)
  • Support for AWS S3 Glacier
  • Support for S3 storage with publishDir

23.05.0-edge NF release

  • Custom root directory for relative paths: NXF_FILE_ROOT
  • New process directive: arch for Spack
  • New CLI option: -depth for cloning git repos
  • New channel operator: splitJson
  • Documentation is finally Markdown!

Recent/upcoming events