Pipelines

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nf-core/mag

Assembly and binning of metagenomes
nextflowpipelineworkflownf-core
  • 182
  • 260 KB
  • Updated 6 months ago

nf-core/chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.
nextflowpipelineworkflownf-core
  • 173
  • 155 KB
  • Updated 5 months ago

nf-core/scrnaseq

A single-cell RNAseq pipeline for 10X genomics data
nextflowpipelineworkflownf-core
  • 169
  • 127 KB
  • Updated 5 months ago

nf-core/atacseq

ATAC-seq peak-calling and QC analysis pipeline
nextflowpipelineworkflownf-core
  • 161
  • 198 KB
  • Updated 5 months ago

nf-core/ampliseq

Amplicon sequencing analysis workflow using DADA2 and QIIME2
nextflowpipelineworkflownf-core
  • 157
  • 450 KB
  • Updated 6 months ago

nf-core/nanoseq

Nanopore demultiplexing, QC and alignment pipeline
nextflowpipelineworkflownf-core
  • 144
  • 161 KB
  • Updated 6 months ago

nf-core/rnafusion

RNA-seq analysis pipeline for detection of gene-fusions
nextflowpipelineworkflownf-core
  • 130
  • 105 KB
  • Updated 5 months ago

nf-core/methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
nextflowpipelineworkflownf-core
  • 130
  • 127 KB
  • Updated 6 months ago

nf-core/fetchngs

Pipeline to fetch metadata and raw FastQ files from public databases
nextflowpipelineworkflownf-core
  • 125
  • 76 KB
  • Updated 5 months ago

nf-core/viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples
nextflowpipelineworkflownf-core
  • 108
  • 214 KB
  • Updated 6 months ago

PGScatalog/pgsc_calc

The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
nextflowworkflowpolygenic-scorespolygenic-risk-scores
  • 96
  • 133 KB
  • Updated 6 months ago

epi2me-labs/wf-human-variation

  • 79
  • 192 KB
  • Updated 5 months ago

nf-core/raredisease

Call and score variants from WGS/WES of rare disease patients.
nextflowpipelineworkflownf-core
  • 72
  • 374 KB
  • Updated 6 months ago

nf-core/smrnaseq

A small-RNA sequencing analysis pipeline
nextflowpipelineworkflownf-core
  • 68
  • 133 KB
  • Updated 6 months ago

epi2me-labs/wf-single-cell

  • 65
  • 82 KB
  • Updated 5 months ago

epi2me-labs/wf-transcriptomes

  • 63
  • 74 KB
  • Updated 5 months ago