Tune in to hear all about Pixelgen Technologies - creators of a novel technology for doing single-cell spatial proteomics.
We chat about how this fascinating technology works, what you can do with the data and why they chose to develop their analysis suite as an open-source nf-core pipeline.
Links:
- Software:
- Science:
- Nature Methods publication: “Molecular pixelation: spatial proteomics of single cells by sequencing”
- Presentations:
- Nextflow Summit 2022 talk: “Pixelgen Technologies ❤︎ Nextflow”
- Nextflow Summit 2024 Boston talk: “Nextflow allows Pixelgen innovation engine to reach the market quicker”
- Nextflow Summit 2024 Barcelona
- Pixelgen:
- Pixelgen Technologies homepage
- @PixelgenTech on twitter / X and LinkedIn
- BioLizard:
- BioLizard homepage
- @BioLizard_nv on twitter / X and LinkedIn
Video chapters (links to YouTube):
- 00:00 - Start
- 00:09 - Welcome
- 00:50 - Introductions
- 01:41 - Intro to Pixelgen Technologies
- 03:08 - Lab methods
- 06:15 - Nature Methods publication
- 09:35 - Data visualisation
- 12:29 - Working with single cell data
- 15:06 - Cell interactions
- 16:05 - Why Pixelgen chose open source
- 20:10 - Pixelator Python package
- 21:40 - Building within nf-core
- 23:01 - Florian - Biolizard
- 25:19 - Pipeline overview
- 26:50 - Using nf-core from a commercial setting
- 28:53 - Coming out of stealth
- 32:24 - Extending Pixelator
- 34:58 - Dealing with customers
- 39:38 - Looking to the future
- 41:32 - Interactive analysis
- 43:12 - Advice for others
- 45:16 - Pixelgen at the Nextflow Summit