Accelerate Drug Discovery with Scalable Bioinformatics

From target discovery to translational research and clinical data analysis, Seqera provides the computational backbone for drug development. Built for bioinformatics. Trusted by life science innovators.

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Unlock Scientific Breakthroughs in Drug Discovery

The journey from molecule to medicine is complex, iterative, and data-intensive. Whether you’re identifying novel targets, modeling protein structures, analyzing -omics data, or scaling up AI-driven discovery, the right infrastructure is key. Seqera empowers R&D teams with a unified platform to orchestrate, scale, and accelerate drug discovery workflows, from bench to bedside.

Target gene expression

Target gene expression

CRISPR screening analysis

CRISPR screening analysis

Variant calling analysis

Variant calling analysis

Protein-drug interaction mapping

Protein-drug interaction mapping

Single-cell drug response

Single-cell drug response

Chromatin accessibility profiling

Chromatin accessibility profiling

Quantitative proteomics analysis

Quantitative proteomics analysis

Immunopeptidome target identification

Immunopeptidome target identification

Why Seqera for Drug Discovery?

In the era of big data, drug discovery demands infrastructure that can keep pace. Seqera powers everything from multi-omics analysis to protein structure prediction and pharmacogenomics. With reproducibility by design, flexible deployment, and deep support for AI and bioinformatics, Seqera gives R&D teams the agility and confidence to accelerate innovation.

Scalable R&D Workflows

Scalable R&D Workflows

Analyze massive experimental datasets without bottlenecks. Seamlessly scale across compute environments to match your drug discovery processes.

Seamless Analysis, Anywhere

Seamless Analysis, Anywhere

Execute complex pipelines across cloud, on-prem, or hybrid environments. Seqera brings the compute to your data, integrating seamlessly with your infrastructure, without disruption.

Collaborate Across Functions

Collaborate Across Functions

Centralize workflows and enable real-time collaboration across research, translational science, and clinical teams. Seqera breaks down silos across data and teams.

Reproducibility at Every Stage

Reproducibility at Every Stage

Leverage version-controlled, containerized workflows using Nextflow and nf-core to ensure traceable, standardized results throughout discovery and development.

Expert Support

Expert Support

Partner with the creators of Nextflow and expert bioinformaticians who understand your technical challenges and goals. From pipeline optimization to scaling infrastructure, we help you advance drug discovery with confidence.

Security Built for Biopharma

Security Built for Biopharma

Operate with confidence in regulated environments. Seqera supports enterprise-grade data governance, audit trails, and compliance for pharmaceutical R&D and beyond.

How Seqera powers every stage of drug discovery

Seqera unifies data, code, compute, and environments into a single, scalable platform, giving R&D teams across pharma and biotech the tools to streamline complex analyses and collaborate without friction. From target discovery to biomarker validation and clinical data analysis, Seqera accelerates drug pipelines by reducing infrastructure overhead and enabling reproducible, collaborative workflows—helping teams bring therapies to market faster with confidence.

Launch Scalable Analysis in One Click

Get started instantly with trusted, community-curated Nextflow pipelines from the nf-core community, or bring your own.

nf-core/rnaseq

https://github.com/nf-core/rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Nextflowpipelinenf-core

nf-core/crisprseq

https://github.com/nf-core/crisprseq

A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).

nf-core/sarek

https://github.com/nf-core/sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

nf-corevariant-calling

nf-core/chipseq

https://github.com/nf-core/chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.

nextflowpipelinenf-core

nf-core/scrnaseq

https://github.com/nf-core/scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

nextflownf-corerna-seq

nf-core/atacseq

https://github.com/nf-core/atacseq

ATAC-seq peak-calling and QC analysis pipeline

nextflowpipelinenf-core

nf-core/quantms

https://github.com/nf-core/quantms

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

nextflownf-corelfq

nf-core/mhcquant

https://github.com/nf-core/mhcquant

Identify and quantify MHC eluted peptides from mass spectrometry raw data

nextflowpipelinenf-core

nf-core/proteinfold

https://github.com/nf-core/proteinfold

Protein 3D structure prediction pipeline

nextflownf-corepipeline

Discover real-world applications of Seqera

Explore applications of Nextflow and Seqera in drug discovery with these useful resources.

Trusted by 13 of 20 Top Pharma Companies

Leading biotech and pharmaceutical companies depend on Seqera to unify their data, teams, and tools across the discovery pipeline. From emerging therapeutics to scaled-up clinical programs, Seqera supports the most ambitious R&D efforts with infrastructure built to meet the demands of modern drug development.

Biopharma R&D

"Seqera provided an intuitive environment supporting early-stage research and clinical trials."

Strategic Partners

"Seqera’s market-leading solutions are becoming essential parts of the biotech architecture"

Translational Research

"We used AI and Nextflow to gain insights from brain scans to help select treatments. "

Data Processing

"We achieved 9-fold faster data processing and enhanced clinical trial efficiency with Seqera"

Transform Your Drug Discovery JourneyFrom target to trial, Seqera helps you build, scale, and optimize every step of your drug discovery process. Get in touch for a demo or start your free trial today.