Self-Serve Interface
Simplified portal enabling any researcher to launch pipelines and explore results independently with governance controls. Real-time status updates and AI-assisted interpretation with no bioinformatics expertise required.
Co-Scientist: Your Intelligent, Collaborative Partner for Scientific Discovery
Bring the full power of Seqera to scientists — from generating pipelines to autonomously executing scientific analysis at scale.
Integrated Capabilities
Co-Scientist combines self-service bioinformatics, interactive intelligence, and autonomous execution into one unified experience.
Interactive Research Intelligence
AI-powered assistance for pipeline development, debugging, and results interpretation. Full context across pipelines, runs, code, compute, and data for intelligent assistance at every stage.
SEQERA AI
Chat with your AI assistant about workflows, pipelines, and more.
● Tip Set NXF_HOME to customize where Nextflow stores data.
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Autonomous Execution
24/7 agents that execute workflows, self-heal failures, optimize resources, and improve code quality without human intervention. Always on and always working while you focus on innovation.
Co-Scientist combines self-service bioinformatics, interactive intelligence, and autonomous execution into one unified experience.
Purpose-Built
for Bioinformatics
Co-Scientist brings Seqera's secure, reproducible execution engine to every scientist. Purpose-built for bioinformatics, Co-Scientist understands scientific context, reasons with you, and executes with intelligence while continuously fixing failures, optimizing resources, and improving code quality.
Any Model, In
Your Environment
Deploy within your infrastructure using bring-your-own-key models connecting to internal LLMs you have already approved, or leverage Seqera-managed cloud. Your proprietary data, code, and AI interactions remain within your security perimeter.
Intelligence with
Total Context
Developed by bioinformaticians and validated by scientists. Deep understanding of Nextflow, nf-core, and the broader bioinformatics ecosystem with complete visibility across your entire stack — enabling intelligent assistance at every stage of analysis. Total context delivers significantly improved correctness from pipeline generation through debugging to results interpretation.
AI-to-Execution
Bridge
Move from conversation to results without context-switching. Transform complex bioinformatics workflows from idea to execution through natural language while background agents keep working continuously.
Democratized Access with
Governed Self-Service
Empower scientists to independently launch pipelines, manage datasets, and explore results through an intuitive interface while maintaining Platform RBAC, SSO, and label-based controls.
Extensible Intelligence
for AI Builders
Integrate with custom AI agents through MCP connectivity and leading AI tools like Claude, Copilot, Cursor, and Codex, with sandboxed execution for safe testing under enterprise governance.
Production-Scale
Automation
Background agents work autonomously 24/7, orchestrating event-driven workflows, self-fixing failed pipelines, optimizing compute costs, and proactively improving code quality.
How Co-Scientist Accelerates Your Work
Interactive Pipeline Building
Explore and generate pipelines interactively by loading from GitHub URLs or public examples with contextual understanding of workflow structure.
Built-in Nextflow Expertise
Purpose-built understanding of Nextflow DSL2, nf-core standards, and bioinformatics best practices, ensuring code quality and reproducibility.
Convert Code to Nextflow
Transform bash, CWL, and WDL scripts into production-ready DSL2 Nextflow pipelines with high accuracy and best practices.
Direct Platform Control
Debug failed runs, modify parameters, launch pipelines, and browse S3 structures directly through AI chat with full Platform integration.
Results Interpretation
Generate intelligent AI summaries of MultiQC analysis results with interactive chat capabilities for deeper exploration of experimental outcomes.
Smart Resource Optimization
Automatically tune compute configurations based on execution patterns, reducing costs and improving performance.
Autonomous Troubleshooting
When failures occur, agents diagnose root causes, apply fixes, and restart pipelines automatically. Always on, always responsive.
Background Agents
Kick off agentic workflows and walk away. Background agents work autonomously to chain pipeline executions, trigger on data arrival, and orchestrate multi-step analyses.
Terminal-Native Intelligence
Build, debug, and deploy Nextflow pipelines from your command line with full access to your Platform workspace and local development environment.
Frontier intelligence in your environment. Always on, always responsive.