From Complete Beginner to nf-core Contributor

Jan 20, 2026
NextflowCommunity

As part of my training in the scientist training programme, I undertook a Master’s project to develop, validate, and implement a long-read bioinformatics pipeline for rare disease diagnostics using Nextflow.

Nour MahfelNour Mahfel

Streamlined Version Control for Studios: Introducing Git Repository Integration

Jan 15, 2026
Seqera Platform

At the recent Nextflow Summit, we announced a powerful new capability for Seqera Studios: native Git repository integration. This update transforms how teams manage interactive analysis environments by bringing version control directly into the Studio creation workflow, enabling reproducible, shareable, and team-friendly development environments.

Rob NewmanRob Newman

Building a Scalable Protein Design Pipeline with Seqera AI for Adaptyv's Nipah Binder Competition

Jan 08, 2026
Seqera Platform

Here, we demonstrate how we used Seqera AI to build a scalable protein design pipeline that helped us rank 6th (based on ipSAE ranking) in Adaptyv’s Nipah Binder Competition

Florian Wuennemann
Edmund Miller
Florian Wuennemann & Edmund Miller

Paving the Way for the Next Generation of Nextflow Ambassadors in Africa

Dec 15, 2025
CommunityNextflow

As Nextflow Ambassadors, embarked on an inspiring journey to empower the next Tunisian generation of bioinformaticians and more across Africa - through the power of Nextflow.

Firas ZemzemFiras Zemzem

End-to-End AI-Enabled Variant Analysis in Seqera Studios with the Help of AIVA

Dec 11, 2025
Seqera Platform

Studios enables researchers to perform AIVA's AI-powered variant analysis – enabling seamless integration between bioinformatics pipelines and clinical analysis.

Drew DiPalma
Tarun Mamidi
Drew DiPalma & Tarun Mamidi

Bioinformatics Pipelines Through the Ages: From Bash to Nextflow to Agents

Dec 10, 2025
NextflowSeqera Platform

Bioinformatics tools and workflows are rapidly transforming to address increasing complexity and demands for reproducibility, scalability, and collaboration. Here's my retrospective on this evolution in the industry.

Ken BrewerKen Brewer

Simplifying Workflow Automation: Node-RED Integration for Seqera

Nov 25, 2025
Seqera Platform

We’re delighted to announce that we’ve just released a new Node-RED integration for Seqera which democratizes automation, enabling researchers to build workflows without depending on IT teams.

Phil EwelsPhil Ewels

From Workflows to People: Building Community through Nextflow and nf-core Training

Oct 30, 2025
Nextflow

In 2021, my team at the UAB Biological Data Science Core (U-BDS) fully transitioned to using Nextflow and nf-core pipelines as our standard for all analytical processing which can be automated prior to data interpretation and visualization.

Lara IanovLara Ianov

Nextflow 25.10 and the New Plugin Registry: Major Updates for the Bioinformatics Community

Oct 24, 2025
Nextflow

Today, we're excited to announce key updates in Nextflow 25.10, including static types, workflow inputs and outputs, new commands (nextflow auth and nextflow launch), and S3 performance improvements. We've also launched the official Nextflow Plugin Registry to streamline plugin discovery and management across the community.

Ben Sherman
Phil Ewels
Paolo Di Tommaso
Ben Sherman, Phil Ewels & Paolo Di Tommaso

MultiQC Turns 10: Shaping the Gold Standard in Bioinformatics Reporting

Oct 24, 2025
MultiQC

Ten years ago, a simple idea emerged: what if we could visualize QC metrics in a single, interactive report? That became MultiQC, and today we're celebrating a decade of transforming bioinformatics worldwide.

Phil EwelsPhil Ewels

What’s New at Seqera: GxP-Aligned Bioinformatics, Expanded Data Connections, AI Integrations, and More

Oct 23, 2025
Seqera Platform

I began today's Nextflow Summit talking about our vision to make scientists' lives simpler, one pipeline at a time. The same platform, but better suited to bioinformatics in 2025. Every product update we’ve announced today builds on this foundation, moving us through the complete journey from scientific infrastructure, through innovation and velocity. From GxP-aligned pipeline versioning and in-platform data exploration on HPC, to AI in Platform and our new MCP Server, here’s the latest Seqera updates you won’t want to miss.

Evan FlodenEvan Floden

Efficient S3 Transfers in Nextflow: Moving to AWS SDK v2

Oct 23, 2025
Nextflow

The upcoming 25.10 release of Nextflow uses the AWS Java SDK v2, which brings a significant performance boost to pipelines running on Amazon S3. In this blog post, we will show how this new version of Nextflow improves S3 performance, both at the level of basic S3 operations and end-to-end workflow runs.

Jorge Ejarque
Ben Sherman
Jorge Ejarque & Ben Sherman

Enabling Single-Cell Benchmarks at Scale: The OpenProblems.bio, Viash, and Seqera Partnership

Oct 14, 2025
Seqera PlatformCommunity

Single-cell analysis sits at the intersection of machine learning and biology. Advances in microfluidic technology have transformed data collection, creating large, tabular datasets well suited to machine-learning (ML) methods. OpenProblems.bio formalizes evaluating approaches into living, community‑run benchmarks (curated tasks, datasets, methods, and metrics) and then executes them as robust pipelines.

Evan Floden
Robrecht Cannoodt
Evan Floden & Robrecht Cannoodt

Introducing the Seqera MCP Server: Bringing Seqera to Your Preferred AI Agent

Oct 09, 2025
Seqera Platform

The AI revolution is reshaping how we interact with computational infrastructure. We recently announced the Seqera AI Integration in Platform, our purpose-built bioinformatics AI that can directly execute, debug, and launch workflows within Seqera Platform. Today, we're taking the next decisive step forward by opening Seqera to the entire AI ecosystem through our new Seqera MCP server. Fully integrated with Seqera single sign on (SSO), you can make your preferred AI tool (e.g. Claude AI, VS Code Copilot, Cursor) your new control center for Seqera Platform.

Paolo Di TommasoPaolo Di Tommaso

Achieve Granular Cloud Resource Tracking with Dynamic Resource Labels

Oct 07, 2025
Seqera Platform

Today, we are excited to announce dynamic resource labels — a new Seqera Platform feature that solves the per-workflow cost tracking challenge by automatically injecting unique workflow and session identifiers into every cloud job. This removes the necessity for manual configuration, whether your workflows run in AWS, Azure, or Google Cloud.

Anton Tsyganov-Bodounov
Llewellyn van der Berg
Anton Tsyganov-Bodounov & Llewellyn van der Berg

MAGFlow/BIgMAG: The Batman & Robin of the Metagenomics Field

Sep 22, 2025
NextflowCommunity

In the metagenomics field, there are at least 33 bioinformatics pipelines aimed at recovering MAGs (please check 2Pipe), and you may wonder: do I obtain the same results with different pipelines? How do they compare in terms of genome quality and completeness? Do my bins (draft MAGs) match the Minimum Information about a MAG (MIMAG criteria)? Is the taxonomic assignment of the bin shared across pipeline outputs? For instance, let’s say that you’ve run three different binning tools and a handful of quality-measuring software, how do you keep track of all those results without drowning in TSV files?

Jeferyd Yepes GarcíaJeferyd Yepes García