Achieve Granular Cloud Resource Tracking with Dynamic Resource Labels

Oct 07, 2025
Seqera Platform

Today, we are excited to announce dynamic resource labels — a new Seqera Platform feature that solves the per-workflow cost tracking challenge by automatically injecting unique workflow and session identifiers into every cloud job. This removes the necessity for manual configuration, whether your workflows run in AWS, Azure, or Google Cloud.

Anton Tsyganov-Bodounov
Llewellyn van der Berg
Anton Tsyganov-Bodounov & Llewellyn van der Berg

MAGFlow/BIgMAG: The Batman & Robin of the Metagenomics Field

Sep 22, 2025
NextflowCommunity

In the metagenomics field, there are at least 33 bioinformatics pipelines aimed at recovering MAGs (please check 2Pipe), and you may wonder: do I obtain the same results with different pipelines? How do they compare in terms of genome quality and completeness? Do my bins (draft MAGs) match the Minimum Information about a MAG (MIMAG criteria)? Is the taxonomic assignment of the bin shared across pipeline outputs? For instance, let’s say that you’ve run three different binning tools and a handful of quality-measuring software, how do you keep track of all those results without drowning in TSV files?

Jeferyd Yepes GarcíaJeferyd Yepes García

6 Reasons Why Bioinformatics is Hard and How Seqera Helps

Sep 18, 2025
Seqera Platform

As science accelerated, teams needed more than just workflow tools, they needed better data integration, scalability, and collaboration. Scientific progress was getting stuck because the technology was too complex. That’s why we created Nextflow and Seqera. In the blog post, we highlight six core problems that make bioinformatics harder than it should be and how Seqera, the Nextflow-first tech stack, addresses each one.

Esha JoshiEsha Joshi

Seqera AI in Platform: Develop, Debug, and Execute in One Unified Experience

Sep 16, 2025
Seqera Platform

Today, we're excited to announce that Seqera AI now has read and write access to Seqera Platform. This enables Seqera AI to directly interact with Seqera Platform primitives to debug pipelines, modify parameters, and launch runs, all without switching context between different tools and interfaces.

Sasha DagayevSasha Dagayev

What’s New: Seqera Platform Enterprise Release 25.2

Sep 04, 2025
Seqera Platform

Seqera Platform Enterprise 25.2 delivers significant enhancements across security, observability, and flexibility to accelerate your workflow orchestration capabilities. Key updates in this release include redesigned user interfaces, expanded cloud support, and powerful new development tools.

Drew DiPalmaDrew DiPalma

Nebulaworks and Nextflow: Scaling Machine-Learning in Pharma

Aug 27, 2025
Nextflow

Nextflow, combined with Nebulaworks’ implementation expertise, delivers scalable, reproducible ML pipelines that integrate MLflow experiment tracking with portable workflow orchestration, unifying pharmaceutical teams and accelerating drug discovery.

Anthony Ramirez
Rob Syme
Anthony Ramirez & Rob Syme

Optimizing High-Throughput Bioinformatics with Fusion

Aug 19, 2025
Seqera Platform

Fusion is the cloud-native file system designed and optimized for Nextflow pipelines that removes these barriers. It simplifies infrastructure, enhances performance, and cuts costs, making it easier for bioinformaticians to develop, maintain, and scale pipeline code.

Paolo Di TommasoPaolo Di Tommaso

Scaling with Seqera: From Prototype to Enterprise-Grade Deployment

Aug 14, 2025
Seqera Platform

Modern scientific research doesn’t just scale up, it scales in every direction: across code, compute, teams, and projects. Today, success isn’t measured by how much data is processed, but by how rapidly teams can adapt, reproduce results, and scale efficiently. Seqera exists to enable this. In this blog, we explore how the Seqera ecosystem empowers R&D leaders to scale innovation, streamline operations, and deliver faster, more reproducible scientific outcomes.

Esha JoshiEsha Joshi

Accelerating Innovation: Inside the Genomics England Hackathon 2025

Aug 06, 2025
Seqera

Last month, Seqera hosted a hackathon with Genomics England, bringing together bioinformaticians and Nextflow experts to tackle real-world challenges and enhance workflow capabilities. Over 2 days, teams tackled several critical projects, from following nf-core best practices to converting legacy WDL variant calling pipelines to Nextflow. The goal was to accelerate development, build technical confidence, and embed best practices across Genomics England.

Rike Hanssen
Adam Talbot
Harshil Patel
Rike Hanssen, Adam Talbot & Harshil Patel

Teaching, Training, and Transforming: Building Capacity with Nextflow in Vermont

Jul 01, 2025
NextflowCommunity

In our work within a busy core facility as well as for an infectious diseases group at the University of Vermont, we have to collaborate with many investigators and students. I discovered Nextflow and started using it intensively last year and haven't looked back. Currently I use Nextflow and nf-core for most of my projects. Here I want to discuss how I have used it for collaborations.

Ramiro Barrantes ReynoldsRamiro Barrantes Reynolds

Replatforming Science: Software as a Strategic Lever in Modern Pharma R&D

Jul 01, 2025
Seqera

The pharmaceutical industry stands at a pivotal moment. Organizations now find themselves constrained, not by the science, but by the software and systems supporting it. Here, I’ll outline five major shifts redefining how biopharma teams are scaling their research operations, and why these changes are shaping scientific performance, collaboration, and long-term agility.

Evan FlodenEvan Floden

Seqera AI: Pipeline Mode, SRA Search, GitHub Integration, and the Nextflow VS Code Extension

Jun 26, 2025
Seqera

We’ve introduced powerful new enhancements to Seqera AI that elevate how you build, understand, and optimize Nextflow pipelines. Whether you’re starting from scratch or refining complex workflows, Seqera AI delivers deeper insight and smarter automation at every step of the development lifecycle. In this blog post, we highlight what’s new with Seqera AI.

Sasha DagayevSasha Dagayev

BigOmics Meets Studios: End-to-end Exploration of RNA-Seq and Proteomics Data in Seqera Platform

Jun 25, 2025
Seqera Platform

BigOmics Analytics have partnered with Seqera to bring Omics Playground (BigOmics’ interactive RNA-seq and proteomics workbench) into Studios (the interactive analysis feature of Seqera Platform). The result is a seamless, end-to-end path from raw reads to interactive plots, all deployed on the same infrastructure as your Nextflow pipelines.

Rob Syme
Axel Martinelli
Rob Syme & Axel Martinelli

Seqera Integrates NVIDIA Parabricks and Fusion to Seamlessly Accelerate Genomics Analysis

Jun 12, 2025
Seqera Platform

NVIDIA and Seqera have partnered to combine the strengths of NVIDIA® Parabricks®,a GPU-accelerated software suite for omics, and Fusion, Seqera’s optimized filesystem for cloud-native Nextflow pipelines. Together, these technologies dramatically accelerate data analysis, reduce costs, and simplify cloud infrastructure for bioinformatics teams.

Edmund Miller
Rike Hanssen
Rob Syme
Florian Wuennemann
Edmund Miller, Rike Hanssen, Rob Syme & Florian Wuennemann

Databricks and Nextflow: Seamless Analytics for Scientific Workflows

Jun 11, 2025
Nextflow

We’re thrilled to announce a powerful new capability for bioinformaticians: native Databricks SQL support in Nextflow via the nf-sqldb plugin. This integration bridges the gap between Nextflow’s scalable, reproducible scientific workflows and Databricks’ powerful data analytics platform, enabling end-to-end workflows that are more connected, efficient, and scalable.

Edmund Miller
Paolo Di Tommaso
Jorge Ejarque
Edmund Miller, Paolo Di Tommaso & Jorge Ejarque

Deploying custom applications in Seqera Studios

May 28, 2025
Seqera Platform

Studios already provides pre-built, version-controlled container template images (namely Jupyter, R IDE, VS Code, and Xpra). But what if you need an application we don’t offer? The solution: add your own. In this blog post, we’ll demonstrate how to build custom Docker images for Studios and highlight useful examples.

Edmund Miller
Florian Wuennemann
Jon Manning
Edmund Miller, Florian Wuennemann & Jon Manning