Build, Validate & Scale Nextflow with Seqera
Trusted by enterprise bioinformatics teams, Seqera is the end-to-end platform that brings your data, pipelines, and teams together. Built by the team behind Nextflow.
Optimized for Bioinformatics at Scale
The Nextflow-First Tech Stack
Seqera unifies containers, Git, and code for reproducible pipelines across the full dev-to-prod lifecycle. Wave, Fusion, and MultiQC streamline execution and reporting, while Seqera AI accelerates R&D with nf-core best practices.
End-to-End Pipeline Management
Seqera gives you full control of your Nextflow pipelines from early experimentation to deployment. Reuse modules and environments across dev and prod, monitor runs with detailed metrics, and standardize workflows to reduce rework and technical debt.
Developer-First, Powered by AI
Seqera AI helps you write, test, and optimize Nextflow pipelines faster with context-aware guidance rooted in nf-core best practices. Integrated into VS Code, it lets you generate, edit, and troubleshoot DSL2 workflows using natural language directly from your IDE.
Integrated Interactive Analysis with Studios
Studios lets you launch Jupyter, R, VS Code, and other interactive apps directly on your pipeline infrastructure, with no data movement or context switching. Use pre-built container templates or bring your own images for fully customized analysis.
Multi-Cloud and On-Prem Support Without Lock-In
Run compute where your data resides. Seqera supports public cloud, private cloud, hybrid, and on-prem without vendor lock-in.
Built For Bioinformaticians, By Bioinformaticians
Seqera was created by the team behind Nextflow with a deep understanding of how bioinformaticians work and provides the tools they need: reproducible development, seamless data handling, integrated QC, and AI-powered pipeline support that reflect real workflows in practice.
Perform Data Analyses Without DevOps Overhead
Run reproducible analysis at scale all in one place, allowing you to focus on the science and not the infrastructure complexities.
Complete Cost Visibility and Control
Optimize costs and resource usage with real-time monitoring and tracking of pipeline runs. Leverage spot instances for automatic cost savings and use multi-account support to enable precise budget allocation across teams and projects.
Unified Platform for Data, Pipelines & Compute
Seamless Journey from Development to Production
Streamline your scientific data lifecycle from early prototypes to enterprise-scale deployment without friction. Reuse components, environments, and configurations across dev and prod while maintaining reproducibility, traceability, and consistency at every step.
Simplified Flexibility, Built to Scale
Reduce complexity with a standardized infrastructure that abstracts away cloud and tool integration. Run portable pipelines across any environment with the confidence that your workflows will scale reliably without DevOps overhead.
A Powerful Ecosystem That Works for You
Integrate seamlessly with Nextflow-first tools like Wave, Fusion, and MultiQC to orchestrate data, scale pipelines, and generate reproducible reports. Together they save time, cut costs, and accelerate the delivery of scientific results.
Total Visibility Across Pipelines
Gain unified visibility into every workflow, run, and dataset across your organization. Monitor resource usage in real time, trace results, and troubleshoot failed jobs efficiently with detailed logging and metrics.
Unmatched Nextflow Expertise
Work directly with Nextflow's creators for guidance and support that no one else can offer. Leverage expert insights to optimize pipelines, adopt best practices, and scale your research confidently.
Delivering Real-World Results
5x+
Reduction in pipeline run time
“We reduced pipeline runtime from 8 days to just 1.5 days, boosting efficiency and accelerating data analysis. This drastic reduction in TAT enabled our customer to increase processing from 1 batch/week to 20 batches/week, ensuring that the pipeline is not a bottleneck.”
— Senior Director, Strand Life Sciences
1000s
Of samples processed per day on the same compute
“In one project, 1000s of cells per patient were processed over just 2 weeks, enabling rapid return of results to help make faster, more informed decisions on the etiology of disease and treatment response.”
— VP Computational Biology & Analytics, BioSkryb Genomics
50%
Less time running workflows
“By running our Nextflow pipelines with Seqera, we now spend 50% less time compared to running individual workflows on EC2.”
— Associate Director of Data and Engineering, Sage Bionetworks
5x+
Reduction in pipeline run time
“We reduced pipeline runtime from 8 days to just 1.5 days, boosting efficiency and accelerating data analysis. This drastic reduction in TAT enabled our customer to increase processing from 1 batch/week to 20 batches/week, ensuring that the pipeline is not a bottleneck.”
— Senior Director, Strand Life Sciences
1000s
Of samples processed per day on the same compute
“In one project, 1000s of cells per patient were processed over just 2 weeks, enabling rapid return of results to help make faster, more informed decisions on the etiology of disease and treatment response.”
— VP Computational Biology & Analytics, BioSkryb Genomics
50%
Less time running workflows
“By running our Nextflow pipelines with Seqera, we now spend 50% less time compared to running individual workflows on EC2.”
— Associate Director of Data and Engineering, Sage Bionetworks
Equip your team with the platform purpose-built for bioinformaticians using Nextflow.
Book a demo today and see how Seqera can help your science scale securely and reproducibly.